Publications

• Janáček, J., Prášil, I.: Quantification of plant frost injury by nonlinear fitting of an s-shaped function.- Cryo-Letters 12, 1991, 47-52
• Janáček, J., Prášil, I.: Stimulation of net CO2 assimilation rate of two wheat cultivars by 1 kPa O2 during the low temperature acclimation. Photosynthetica 26 (3), 1992, 341-346
• Prášil, I., Papazisis, K., Janáček, J., Prášilová. P.: Zimovzdornost a stupně odolnosti českých a slovenských odrůd ozimé pšenice (Winter hardiness and rating of czech and slovak cultivars of winter wheat). Rostlinná výroba (Plant Production), 1994, 803-816
• Kubínová, L., Janáček, J., Antoš, K., Ježek, B., Indra, M., Jirák, D., Krekule, I.: Application of graphical workstation SGI Indy and IBM PC to rendering and visualization of the objects captured by a confocal microscope. Acta vet. Brno 65, 1996, 253-262
• Bláha, L., Janáček, J.: Evaluation of wheat cultivars root traits at standard and low pH environment conditions with higher concentration of aluminium ions. Biologia, Bratislava, 52, 1997, 95-98
• Janáček, J.: Stomatal limitation of photosynthesis as affected by water stress and CO2 concentration. Photosynthetica 34 (3), 1997, 473-476
• Kubínová, L., Janáček, J.: Estimating surface area by the isotropic fakir method from thick slices cut in an arbitrary direction. Journal of Microscopy 191 (2), 1998, 201-211
• Janáček, J., Jirkovská, M., Haigron, P., Dillenseger, J.-L.: 3D navigation through villous vessels in human placenta, Innovation and Technology in Biology and Medicine 19 (6), 1998, 483-488
• Jirkovská, M., Kubínová, L., Janáček, J., Bendl, J.: Quantitative characterization of the branching of placental villous capillaries. Acta Stereologica 17 (1), 1998, 87-92
• Janáček, J., Kubínová, L.: 3D reconstruction of surfaces captured by confocal microscopy, Acta Stereologica 17 (2), 1998, 259-264
• Kubínová, L. , Janáček, J., Guilak, F. , Opatrný, Z.: Comparison of several digital and stereological methods for estimating surface area and volume of cells studied by confocal microscopy. Cytometry 36, 1999, 85-95
• Kubínová, L., Janáček, J.: Konfokální mikroskopie a trojrozměrná analýza biologických objektů (Confocal microscopy and 3D analysis of biological objects), Lékař a technika 2, 1999, 42-46
• Janáček, J.: Errors of spatial grids estimators of volume and surface area, Acta Stereologica 18 (3), 1999, 389-396 (PDF)
• Bláha, L., Michalová, A., Janáček, J.: Comparison of old and new cultivars of winter wheat, Scientia Agriculturae Bohemica 31 (2), 2000, 101-109
• Philimonenko, A.A., Janáček, J., Hozák, P.: Statistical evaluation of colocalization patterns in immunogold labeling experiments, Journal of Structural Biology 132 (3), 2000, 201-210
• Kubínová, L., Janáček, J.: Confocal microscopy and stereology: estimating volume, number, surface area and length by virtual test probes applied to three-dimensional images, Microscopy Research and Technique 53, 2001, 425-435
• Janáček, J.: Estimating length and surface area by systematic projections, Image Analysis and Stereology 20 (Suppl 1), 2001, 89-94 (PDF)
• Jirkovská, M., Janáček, J., Jirsová, Z., Kubínová, L., Zemanová, Z.: Spatial arangement of peritubular vascular bed in chick mesonephros, Image Analysis and Stereology 20 (Suppl 1), 2001, 338-341 (PDF)
• Philimonenko, V.V., Janáček, J. and Hozák, P.: Statistical evaluation of clustering and co-localization patterns. Biotech International 13, 2001, 20-24
• Kubínová, L., Janáček, J., Ribarič, S., Čebašek, V., Eržen, I.: Three-dimensional study of the capillary supply of skeletal muscle fibres using confocal microscopy, Journal of Muscle Research and Cell Motility 22, 2001, 217-227
• Kubínová, L., Janáček, J., Krekule, I.: Stereological methods for estimating geometrical parameters of microscopic structure by three-dimensional imaging, in Confocal and two-foton microscopy: foundations, applications and advances, edited by Alberto Diaspro, Wiley-Liss, Inc., New York, 2002, 299-332 (Images link)
• Jirkovská, M., Kubínová, L., Janáček, J., Moravcová, M., Krejčí, V., Karen, P.: Topological properties and spatial organization of villous capillaries in normal and diabetic placentas. Journal of Vascular Research, 39, 2002, 268-278
• Philimonenko, V.V., Janáček, J., Hozák, P.: LR White is preferable to Unicryl for immunogold detection of fixation-sensitive nuclear antigens. European Journal of Histochemistry 46, 2002, 359-364
• Kubínová, L., Mao, X.W., Janáček, J., Archambeau, J.O: Stereology techniques in radiation biology. Radiation Research 160, 2003, 110-119
• Karen, P., Jirkovská, M., Tomori, Z., Demjénová, E., Janáček, J., Kubínová, L.: Three-dimensional computer reconstruction of large tissue volumes based on composing series of high-resolution confocal images by GlueMRC and LinkMRC software, Microscopy Research and Technique 62, 2003, 415-422
• Kubínová, Janáček, J., Karen, P., Radochová, B., Difato, F., Krekule, I.: Confocal stereology and image analysis: methods for estimating geometrical characteristics of cells and tissues from three-dimensional confocal images, Physiological Research 53 (Suppl. 1), 2004, S47-S55
• Schoefer, Ch., Janáček, J., Weitpoltshammer, K., Pourani, J., Hozák, P.: Mapping of cellular compartments based on ultrastructural immunogold labelling, Journal of Structural Biology 147, 2004, 128-135
• Difato, F., Mazzone, F., Scaglione, S., Fato, M., Beltrame, F., Kubínová, L., Janáček, J., Ramoino, P., Vicidomini, G., Diaspro, A.: Improvement in volume estimation from confocal sections after image deconvolution, Microscopy Research and Technique 64, 2004, 151-155
• Philimonenko, A.A., Jackson, D.A., Hodny, Z., Janáček, J., Cook, P.R., Hozák, P.: Dynamics of DNA replication: an ultrastructural study, Journal of Structural Biology 148, 2004, 279-289
• Marek, J., Demjénová, E., Janáček, J., Tomori, Z., Zolotová, I., Valle, F., Favre, M., Dietler, G.: Interactive measurement and characterization of DNA molecules by analysis of AFM images. Cytometry 63A, 2005, 87-93
• Jirkovská, M., Náprstková, I., Janáček, J., Kučera, T., Macášek, J., Karen, P., Kubínová, L.: Three-dimensional reconstructions from non-deparaffinized tissue sections, Anat Embryol 210, 2005, 163-173
• Radochová, B., Janáček, J., Schwarzerová, K., Demjénová, E., Tomori, Z., Karen, P., Kubínová, L.: Analysis of endoplasmic reticulum of tobacco cells using confocal microscopy, Image Analysis and Stereology 24, 2005, 181-185
• Kyselá, K., Philimonenko, A.A., Philimonenko, V.V., Janáček, J., Kahle, M., Hozák, P.: Nuclear distribution of actin and myosin I depends on transcriptional activity of the cell, Histochem Cell Biol 124, 2005, 347-358
• Náprstková, I., Radochová, B., Novotná, B., Jirkovská, M., Janáček, J., Kubínová, L.: Quantitative analysis of embryonic kidney impairment by confocal microscopy and stereology: effect of 1,2-dibromoethane in the chick mesonephros, British Poultry Science 46, 2005, 661-667
• Janáček, J., Saxl, I.: Measurement of length and Euler characteristic in 3D images. Proceedings S4G, Editors R. Lechnerová, I. Saxl, V. Beneš, Prague, Union of Czech Mathematicians and Physicists, 2006, 497-502 (PDF)
• Štencel, M., Janáček, J.: On calculation of chamfer distance and Lipschitz covers in digital images. Proceedings S4G, Editors R. Lechnerová, I. Saxl, V. Beneš, Prague, Union of Czech Mathematicians and Physicists, 2006, 517-522 (PDF), ImageJ PlugIn
• Janáček, J.: Variance of periodic measure of bounded set with random position, Comment. Math. Univ. Carolinae 47, 2006, 473-482 (PDF)
• Čapek, M., Janáček, J., Kubínová, L.: Methods for compensation of the light attenuation with depth of images captured by confocal microscopy, Microscopy Research and Technique 69, 2006, 624-635
• Albrechtová, J., Janáček, J., Lhotáková, Z., Radochová, B., Kubínová, L.: Novel efficient methods for measuring mesophyll anatomical characteristics from fresh thick sections using stereology and confocal microscopy: application on acid rain-treated Norway spruce needles. Journal of Experimental Botany 58, 2007, 1451-1461
• Kundrát, M., Janáček, J.: Cranial pneumatization and auditory perceptions of the oviraptorid dinosaur Conchoraptor gracilis (Theropoda, Maniraptora) from the Late Cretaceous of Mongolia. Naturwissenschaften 94, 2007, 769-778
• Čebašek, V., Kubínová, L., Janáček, J., Ribarič, S., Eržen, I.: Adaptation of muscle fibre types and capillary network to acute denervation and shortlasting reinnervation, Cell Tissue Research 330, 2007, 279-289
• Jirkovská, M., Janáček, J., Kaláb, J., Kubínová, L.: Three-dimensional arrangement of the capillary bed and its relationship to microrheology in the terminal villi of normal term placenta. Placenta 29, 2008, 892-897
• Lhotáková, Z., Albrechtová, J., Janáček, Kubínová, L.: Advantages and pitfalls of using free-hand sections of frozen needles for three-dimensional analysis of mesophyll by stereology and confocal microscopy. Journal of Microscopy 232 (1), 2008, 56-63
• Kovanda, J., Hák, T., Janáček, J.: Economy-wide material flow indicators in the Czech Republic: trends, decoupling analysis and uncertainties. Int. J. Environment and Pollution 35 (1), 2008, 25-41
• Janáček, J.: An asymptotics of variance of the lattice points count, Czechoslovak Mathematical Journal 58 (133), 2008, 751-758 (PDF)
• Čapek, M., Brůža, P., Janáček, J., Karen, P., Kubínová, L., Vagnerová, R.: Volume reconstruction of large tissue specimens from serial physical sections using confocal microscopy and correction of cutting deformations by elastic registration, Microscopy Research and Technique 72 (2), 2009, 110-119 (DOI)
• Janáček, J.: On calculation of zeta function of integral matrix, Mathematica Bohemica, 134 (1), 2009, 49-58 (PDF)
• Tonar, Z., Janáček, J., Nedorost, L., Grill, R., Báča, V., Záťura, F.: Analysis of microcracks caused by drop shatter testing of porcine kidneys, Annals of Anatomy 191, 2009, 294-308
• Janáček, J., Čebašek, V., Kubínová, L., Ribarič, S., Eržen, I.: 3D Visualization and measurement of capillaries supplying metabolically different fiber types in the rat extensor digitorum longus muscle during denervation and reinnervation, Journal of Histochemistry and Cytochemistry 57, 2009, 437-447
• Kundrát, M., Janáček, J., Russell, A.P.: Developmental patterns of the crocodilian and avian columella auris: reappraisal of interpretations of the derivation of the dorsal hyoid arch in archosaurian tetrapods. Zoological Journal of the Linnean Society 156, 2009, 384-410
• Kundrát, M., Janáček, J., Martin, S.: Development of transient head cavities during early organogenesis of the nile crocodile (Crocodylus niloticus). Journal of Morphology 270, 2009, 1069-1083
• Čebašek, V., Eržen, I., Vyhnal, A., Janáček, J., Ribarič, S., Kubínová, L.: The estimation error of skeletal muscle capillary supply is significantly reduced by 3D method, Microvascular Research 79, 2010, 40-46
• Janáček, J., Kubínová, L.: Variances of length and surface area estimates by spatial grids: preliminary study, Image analysis and Stereology 29, 2010, 45-52 (PDF)
• Philimonenko, V.V., Janáček, J., Harata, M., Hozák, P.: Transcription-dependent rearrangements of actin and nuclear myosin I in the nucleolus. Histochem Cell Biol 134, 2010, 243-249
• Philimonenko, A.A., Janáček, J., Snyers, L., Almeder, M., Berger, W., Schmidt, W., Schöfer, Ch., Hozák, P., Weipoltshammer, K.: Chromosomal dynamics of cell cycle regulator gene p21 during transcriptional activation. Journal of Structural Biology 173, 2011, 382–390
• Kozina, V., Geist, D., Kubínová, L., Bilič, E., Karnthaler, H.P., Waitz, T., Janáček, J., Chernyavskiy, O., Krhen, I., Ježek, D.: Visualization of Reinke’s crystals in normal and cryptorchid testis. Histochem Cell Biol 135, 2011, 215–228
• Hájková, Z., Bugajev, V., Dráberová, E., Vinopal, S., Dráberová, L., Janáček, J., Dráber, P., Dráber, P.: STIM1-directed reorganization of microtubules in activated mast cells. J Immunol 186 (2), 2011, 913-923
• Janáček, J., Cvetko, E., Kubínová, L., Travnik, L., Eržen, I.: A novel method for evaluation of capillarity in human skeletal muscles from confocal 3D images, Microvascular Research 81, 2011, 231–238
• Eržen, I., Janáček, J., Kubínová, L.: Characterization of the capillary network in skeletal muscles from 3D data, Physiol. Res. 60, 2011, 1-13 (PDF)
• Kochová, P., Cimrman, R., Janáček, J., Witter, K., Tonar, Z.: How to asses, visualize and compare the anisotropy of linear structures reconstructed from optical sections—A study based on histopathological quantification of human brain microvessels. Journal of Theoretical Biology 286, 2011, 67-78
• Dráberová, E., Vinopal, S., Morfini, G., Liu, P.S., Sládková, V., Sulimenko, T., Burns, M.R., Solowska, J., Kulandaivel, K., de Chadarévian, J-P., Legido, A., Mörk, S.J., Janáček, J., Baas, P.W., Dráber, P., Katsetos, Ch.D.: Microtubule-severing ATPase spastin in glioblastoma: increased expression in human glioblastoma cell lines and inverse roles in cell motility and proliferation. Journal of Neuropathology & Experimental Neurology 70 (9), 2011, 811-826 (DOI)
• Jirkovská, M., Kučera, T., Kaláb, J., Jadrníček, M., Niedobová, V., Janáček, J., Kubínová, L., Moravcová, M., Žižka, Z., Krejčí, V.: The branching pattern of villous capillaries and structural changes of placental terminal villi in type 1 diabetes mellitus. Placenta 33, 2012, 343-351
• Janáček, J., Kreft, M., Čebašek, V., Eržen, I.: Correcting the axial shrinkage of skeletal muscle thick sections visualized by confocal microscopy, Journal of Microscopy 246, 2012, 107-112
• Cvetko, E., Karen, P., Janáček, J., Kubínová, L., Lopez Plasencia, A., Eržen, I.: Human masseter muscle fibers from the elderly express less neonatal myosin than those of young adults. Anatomical Record 295 (8), 2012, 1364-1372
• Kubínová, L., Mao, X.W., Janáček, J.: Blood capillary length estimation from three-dimensional microscopic data by image analysis and stereology. Microscopy and Microanalysis 19, 2013, 898–906
• Cvetko, E., Janáček, J., Kubínová, L., Eržen, I.: The capillary pattern in human masseter muscle during ageing. Image Analysis and Stereology 32 (3), 2013, 135-144 (PDF)
• Janáček, J., Čapek, M., Michálek, J., Karen, P., Kubínová, L.: 3D microscopic imaging and evaluation of tubular tissue architecture, Physiological Research 63(Suppl.1), 2014, S49-S55 (PDF)
• Kubínová, Z., Janáček, J., Lhotáková, Z., Albrechtová, J., Kubínová, L.: Unbiased estimation of chloroplast number in mesophyll cells: advantage of a genuine three-dimensional approach. Journal of Experimental Botany 65, 2014, 609-620
• Trojanová, J., Kulik, A., Janáček, J., Králíková, M., Syka, J., Tureček, R.: Distribution of glycine receptors on the surface of the mature calyx of Held nerve terminal. Frontiers in Neural Circuits 8, 2014, Article Number: 120, 12p
• Brejchová, J., Sýkora, J., Ostašov, P., Merta, L., Roubalová, L., Janáček, J., Hof, M., Svoboda, P.: TRH-receptor mobility and function in intact and cholesterol-depleted plasma membrane of HEK293 cells stably expressing TRH-R-eGFP. Biochimica et Biophysica Acta 1848, 2015, 781–796
• Kubínová, L., Janáček, J.: Confocal stereology: an efficient tool for measurement of microscopic structures. Cell Tissue Res 360, 2015, 13–28
• Jirák, D., Janáček, J., Kear, B.P.: A combined MR and CT study for precise quantitative analysis of the avian brain. Scientific Reports 5, 2015
• Tonar, Z., Tomášek, P., Loskot, P., Janáček, J., Králíčková, M., Witter, K.: Vasa vasorum in the tunica media and tunica adventitia of the porcine aorta. Annals of Anatomy 205, 2016, 22-36
• Kolesová, H., Čapek, M., Radochová, B., Janáček, J., Sedmera, D.: Comparison of different tissue clearing methods and 3D imaging techniques for visualization of GFP-expressing mouse embryos and embryonic hearts. Histochemistry and Cell Biology 146, 2016, 141-152
• Techniková, L., Tunák, M., Janáček, J.: Pilling evaluation of patterned fabrics based on gradient field method. Indian Journal of Fibre & Textile Research 41, 2016, 97-101
• Pearce, P., Brownbill, P., Janáček, J., Jirkovská, M., Kubínová, L., Chernyavsky, I.L., Jensen, O.E.: Image-based modeling of blood flow and oxygen transfer in feto-placental capillaries. Plos One 11, 2016, 1-22
• Ziegler, A., Neues, F., Janáček, J., Beckmann, F., Epple, M.: Mineral in skeletal elements of the terrestrial crustacean Porcellio scaber: SRmCT of function related distribution and changes during the moult cycle. Arthropod Structure & Development 46, 2017, 63-76
• Techniková, L., Tunák, M., Janáček, J.: New objective system of pilling evaluation for various types of fabrics. Journal of the Textile Institute 108, 2017, 123-131
• Jirák, D., Janáček, J.: Volume of the crocodilian brain and endocast during ontogeny. Plos One 12, 2017
• Hadraba, D., Janáček, J., Filová, E., Lopot, F., Paesen, R., Fanta, O., Jarman, A., Nečas, A., Ameloot, M., Jelen, K.: Calcaneal tendon collagen fiber morphometry and aging. Microscopy and Microanalysis 23, 2017, 1040-1047
• Eržen, I., Janáček, J., Kreft, M., Kubínová, L., Cvetko, E.: Capillary network morphometry of pig soleus muscle significantly changes in 24 hours after death. Journal of Histochemistry and Cytochemistry 66, 2018, 23-31
• Kubínová, Z., Janáček, J., Lhotáková, Z., Šprtová, M., Kubínová, L., Albrechtová, J.: Norway spruce needle size and cross section shape variability induced by irradiance on a macro- and microscale and CO2 concentration. Trees 32, 2018, 231-244
• Dvořák, J., Švihlík, J., Kybic, J., Radochová, B., Janáček, J., Kukal, J., Borovec, J., Habart, D.: Volume estimation from single images: an application to pancreatic islets. Image Analysis and Stereology 37 (3), 2018, 191-204
• Olejníčková, V., Šaňková, B., Sedmera, D., Janáček, J.: Trabecular architecture determines impulse propagation through the early embryonic mouse heart. Frontiers in Physiology 9, 2019, Article Number: 1876, 12p
• Kubínová, Z., Glanc, N., Radochová, B., Lhotáková, Z., Janáček, J., Kubínová, L., Albrechtová, J.: Unbiased estimation of Norway spruce (Picea abies L. Karst.) chloroplast structure: Heterogeneity within needle mesophyll under different irradiance and CO2. Image Analysis and Stereology 38 (1), 2019, 83-94
• Janáček, J., Brejchová, J., Svoboda, P.: Determination of delta-opioid receptor molecules mobility in living cells plasma membrane by novel method of FRAP analysis. Biochimica et Biophysica Acta - Biomembranes 1861, 2019, 1346-1354
• Beyrand, V., Voeten, D. F. A. E., Bureš, S., Fernandez, V., Janáček, J., Jirák, D., Rauhut, O., Tafforeau, P.: Multiphase progenetic development shaped the brain of flying archosaurs. Scientific Reports 9, 2019
• Umek, N., Horvat, S., Cvetko, E., Kreft, M., Janáček, J., Kubínová, L., Stopar Pintaric, T., Eržen, I.: 3D analysis of capillary network in skeletal muscle of obese insulin-resistant mice. Histochem Cell Biol 152 (5), 2019, 323-331
• Janáček, J., Jirák, D.: Volume tensor estimation using a virtual line grid: study of a developing pheasant brain. Image Analysis and Stereology 38 (3), 2019, 255-260
• Janáček, J., Jirák, D.: Variance of the isotropic uniform systematic sampling. Image Analysis and Stereology 38 (3), 2019, 261-267
• Chafai, D. E., Vostárek, F., Dráberová, E., Havelka, D., Arnaud-Cormos, D., Leveque, P. Janáček, J., Kubínová, L., Cifra, M., Dráber, P.: Microtubule cytoskeleton remodeling by nanosecond pulsed electric fields. Advanced Biosystems 4 (7), 2020, Article: 2000070, 6p
• Umek, N., Janáček, J., Cvetko, E., Eržen, I.: Horizontal deformation of skeletal muscle thick sections visualised by confocal microscopy. Journal of Microscopy 282 (2), 2021, 113-122
• Čapek, M., Blažíková, M., Novotný, I., Chmelová, H., Svoboda, D., Radochová, B., Janáček, J., Horváth, O.: The wavelet-based denoising of images in FiJi, with example applications in structured illumination microscopy. Image Analysis and Stereology 40 (1), 2021, 3-16
• Jerman, A., Janáček, J., Snoj, Ž., Umek, N.: Quantification of the interventional approaches into the pterygopalatine fossa by solid angles using virtual reality. Image Analysis and Stereology 40 (2), 2021, 63-69
• Lopot, F., Dub, M., Flek, J., Hadraba, D., Havlíček, M., Kučera, L., Stoček, O., Veselý, T., Janáček, J: Gearbox mechanical efficiency determination by strain gauges direct application. Applied Sciences - Basel 11 (23), 2021, Article: 11150, 16p
• Gregorovičová, M., Bartoš, M., Jensen, B., Janáček, J., Minne, B., Moravec, J., Sedmera, D.: Anguimorpha as a model group for studying the comparative heart morphology among Lepidosauria: Evolutionary window on the ventricular septation. Ecology and Evolution 12 (11), 2022, Article: e9476, 15p
• Vondrášek, D., Hadraba, D., Přibyl, J., Eckhardt, A., Ošťádal, M., Lopot, F., Jelen, K., Doubková, M., Knitlová, J., Novotný, T., Janáček, J.: Microstructural analysis of collagenous structures in relapsed clubfoot tissue. Microscopy and Microanalysis 29 (1), 2023, 265–272
• Olejníčková, V., Hamor, P.U., Janáček J, Bartoš, M., Zábrodská, E., Šaňková, B., Kvasilová, A., Kolesová, H., Sedmera, D.: Development of ventricular trabeculae affects electrical conduction in the early endothermic heart. Developmental Dynamics 253 (1), 2024, 78-90
• Umek, N., Pušnik, L., Ugwoke, C.K., Šink, Ž., Horvat, S., Janáček, J., Cvetko, E.: Skeletal muscle myosin heavy chain expression and 3D capillary network changes in streptozotocin-induced diabetic female mice. Biomol Biomed [Internet]. 2023 Oct. 30

Jiří Janáček